PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20222_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 890aa    MW: 97454.7 Da    PI: 8.8725
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20222_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.5e-07719740627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C++f +tG C+ G++Ck +H++
  Neem_20222_f_1 719 CPTFEATGSCSLGSKCKLHHPK 740
                     *****************99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3691717IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.709691712IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206713741IPR000571Zinc finger, CCCH-type
SMARTSM003560.8718740IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4719740IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
PESQSADSSQ VLPTYVESDG CLLEKGDLPS VSTYPALAAD ADGVSTTNSN DEMMEFDSPS  60
NMCSPEILSN VAAMQMLNHE SSSQIPNENA CEIDKIPTEK PVLEANSNLS AHTSPSEHAK  120
INLKSDCIVE SGRLVVRRTM LLPSHDVKNT GHSLALTSEE TYGKKNQPSH TVSRINPSCS  180
SSVFSASRNT TSSTCIRKPR TWHRTESSSA SPVPGNKSSL CTVPQQSQLP KNVAKFQSTS  240
YIRKGNSLVR KPAPVAALPQ VAHGLTSSVY RLNSLGISES KKTTGSDSTV DVIHPPNFLR  300
MGGGNAPLER PRTPPLPVVT KVPNRTTNLA VDCTTSPLAE PLPNGCSETT SDPQKSMEIN  360
SELSASSAHL KISETPAKQT GLANSTEIQG EPNDGTLGTA NEKRITYVKQ KSNQLIAASG  420
DCALSVQDPD KTQVLTSEGY YKRRKNQLIR TSLESHINPT VTSVDGAMTS EGEKASNDIF  480
SRSFSKKRSF KVGKKIRKPL KFSLVWTLNG LQSSKGSDHS SYHQKEATLA VAAVEKKRQQ  540
NGVESFASKT KNRSHSAKSR IFRIGSVRYK MDSSRRTLQR ISDDGSSCTA APNLEKNAKK  600
SYIPRRLVIG NDEYVYVSLI PCSSSLLFLS LKWEFWSFQN ECQIVPISCK VFYHAISWVL  660
FDKLNIQRIL TSLLSGLCTN KNCPYRHVHV NPNASTCEGF LKGYCADGNE CRKKHSYVCP  720
TFEATGSCSL GSKCKLHHPK SRSKGKKSRG SRKQKSTYGR YFGSMLVDDS EPQMTRMSES  780
HSTQDNIDLF IEGKLVDYIS LDFSNEEARE ANDALCGQTT FPDNDASDLQ SDDLDELIKP  840
IRIMNCHFCV DEQILQDKGI ISSFSGGAPR IIQVTGRKPA FVGKRSVQIV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4841132e-76AM484113.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X030754.11, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434296.10.0hypothetical protein CICLE_v10000009mg
TrEMBLA0A067GYA90.0A0A067GYA9_CITSI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57801012